species:   Fugra
pid:       PID0983
parent:    FgmilR-7dps-99
paralog:   
locus:     NC_026477.1:4412751-4412930
matures:   ['UCGAGACGUAGUAGCAUAGUUUA', 'AGUGCUUUAUUUUCGUUUCUU']
srr:       SRR6516243
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram NC_026477.1:4412751-4412930

2 out of bounds
10 alignments
8 proper strand
4 stranded perfect matches

      ****************************                                                                                                               **************************         
UAUUAUUAAGUGCUUUAUUUUCGUUUCUUUCUUACAUUUUUGAGAGUAUUGUUACUUACGUGCAGUAGGUAGCUUAUGCUUCUACUUCAAUAUAGGUGAUGCUUUAACCUGGGACUUUUCUUCACAUAUAAAAUACUCAAACAAGUAGAAAUCGAGACGUAGUAGCAUAGUUUAUUAAUA
(((((.((((((((.......(((((((((((.((...(((((((((((.(((((((((.....)))))))))..)))))............(((((.........)))))(((....)))..............))))))...)))))))..))))))....)))))...))).)))))
-------------------------------------------------------------------------------------------------------------------------------------------------------UCGAGACGUAGUAGCAUAGUUUA------ l=23 a=0 c
--------AGUGCUUUAUUUUCGUUUCUU------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=0 c*
---------------------------------------------------------------------------------------------------------------------------------------------------GAAAUCGAGACGUAGUAGCAUAGU--------- l=24 a=1 ma
--------AGUGCUUUAUUUUCGUUUCUUUCUUA-------------------------------------------------------------------------------------------------------------------------------------------------- l=26 a=0 ma*

-------------------------------------------------------------------------------------------------------------------------------------------------------UCGAGACGUAGUAGCAUAGUUUAUa---- l=25 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------GAAAUCGAGACGUAGUAGCAUAGU--------- l=24 a=1 (ma)
--------------------------------------------------------------------------------------------------------------------------------------------------AGAAAUCGAGACGUAGUAGC-------------- l=20 a=1 
--------------------------------------------------------------------------------------------------------------------------------------------------AGAAAUCGAGACGUAGUAGCAUAG---------- l=24 a=1 
-------------------------------------------------------------------------------------------------------------------------------------------------UAGAAAUCGAGACGUAGUAGCAg------------ l=23 a=1 
----------------------------------------------------------------------------------------------------------------------------------------UCAAACAAGUAGAgAUCGAGACGUA------------------- l=25 a=1 
-------------------------------------------------------------------------------------------------------------------------------------UACUCAAACAAGUAGAAAUCGAGA----------------------- l=24 a=1 
--------------------------------------------------------UACGcGCAGUAGGUAGCUUA-------------------------------------------------------------------------------------------------------- l=20 a=1 

mb-00011
ax-1001011
ku-01
ss-100110101100
fn-001
